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chemistryhub FORGE

Tool Development

Welcome to chemistryhub FORGE, the tool development area of chemistryhub. The following pages are maintained by the various owners of each tool. Many of these tools are available as Open Source, and you can download the code via Subversion from this site. Some tools are closed source at the request of the authors, and only a restricted development team has access to the code. See each tool page for details.

Available Tools

Title Alias Status
Avogadro avogadro closed source
LAMMPS lammps closed source
Test Tool testtool closed source
Vistrails vistrails closed source
Visual Molecular Dynamics (VMD) vmd closed source

Debug Console

Close16 MBRequestSessionTimelineDatabase36
$_GET
Array( ) Array(

)
$_POST
Array( ) Array(

)
$_COOKIE
Array( ) Array(

)
$_SERVER
Array( REDIRECT_SCRIPT_URL => /tools, REDIRECT_SCRIPT_URI => http://chemistryhub.org/tools, ... Array(
REDIRECT_SCRIPT_URL => /tools,
REDIRECT_SCRIPT_URI => http://chemistryhub.org/tools,
REDIRECT_nokeepalive => ,
REDIRECT_STATUS => 200,
SCRIPT_URL => /tools,
SCRIPT_URI => http://chemistryhub.org/tools,
nokeepalive => ,
HTTP_HOST => chemistryhub.org,
HTTP_ACCEPT_ENCODING => x-gzip, gzip, deflate,
HTTP_USER_AGENT => CCBot/2.0 (http://commoncrawl.org/faq/),
HTTP_ACCEPT => text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8,
PATH => /sbin:/usr/sbin:/bin:/usr/bin,
SERVER_SIGNATURE => ,
SERVER_SOFTWARE => Apache/2.2.15 (CentOS),
SERVER_NAME => chemistryhub.org,
SERVER_ADDR => 206.221.159.27,
SERVER_PORT => 80,
REMOTE_ADDR => 54.81.8.73,
DOCUMENT_ROOT => /var/www/chemistryhub,
SERVER_ADMIN => root@localhost,
SCRIPT_FILENAME => /var/www/chemistryhub/index.php,
REMOTE_PORT => 51380,
REDIRECT_URL => /tools,
GATEWAY_INTERFACE => CGI/1.1,
SERVER_PROTOCOL => HTTP/1.0,
REQUEST_METHOD => GET,
QUERY_STRING => ,
REQUEST_URI => /tools,
SCRIPT_NAME => /index.php,
PHP_SELF => /index.php,
REQUEST_TIME_FLOAT => 1506158954.402,
REQUEST_TIME => 1506158954
)
separator .
orderBy id
orderDir asc
1 registerIP
2 access
always
renew
tracker.sid 576df29c35ff476016041dc17e01ecf4
tracker.ssid 576df29c35ff476016041dc17e01ecf4
tracker.rsid 576df29c35ff476016041dc17e01ecf4
securiy_code0 ad2e0
session.token d6d7d3181b2f885b72658ec6fe999216
  • site 0.055 seconds (+0.055); 9.75 MB (+9.750) - afterInitialise
  • site 0.077 seconds (+0.022); 11.50 MB (+1.750) - afterRoute
  • site 0.099 seconds (+0.022); 13.50 MB (+2.000) - afterDispatch
  • site 0.108 seconds (+0.010); 13.75 MB (+0.250) - beforeRenderModule mod_custom (Hub Footer)
  • site 0.110 seconds (+0.002); 14.00 MB (+0.250) - afterRenderModule mod_custom (Hub Footer)
  • site 0.111 seconds (+0.000); 14.00 MB (0.000) - beforeRenderModule mod_collect (Collect)
  • site 0.112 seconds (+0.002); 14.25 MB (+0.250) - afterRenderModule mod_collect (Collect)
  • site 0.112 seconds (+0.000); 14.25 MB (0.000) - beforeRenderModule mod_breadcrumbs (Breadcrumbs)
  • site 0.116 seconds (+0.003); 14.25 MB (0.000) - afterRenderModule mod_breadcrumbs (Breadcrumbs)
  • site 0.116 seconds (+0.000); 14.25 MB (0.000) - beforeRenderModule mod_menu (Main Menu)
  • site 0.144 seconds (+0.028); 14.50 MB (+0.250) - afterRenderModule mod_menu (Main Menu)
  • site 0.144 seconds (+0.000); 14.50 MB (0.000) - beforeRenderModule mod_search (Search)
  • site 0.146 seconds (+0.002); 14.75 MB (+0.250) - afterRenderModule mod_search (Search)
  • site 0.147 seconds (+0.000); 14.75 MB (0.000) - beforeRenderModule mod_reportproblems (Trouble Report)
  • site 0.163 seconds (+0.016); 16.00 MB (+1.250) - afterRenderModule mod_reportproblems (Trouble Report)
  • site 0.165 seconds (+0.003); 16.00 MB (0.000) - onAfterRender
  • site 0.167 seconds (+0.002); 16.00 MB (0.000) - sessionStore
16 MB

36 Queries Logged: 0.017073392868042 seconds

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  8. SELECT extension_id AS id, element AS "option", params, enabled
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      WHERE `type` = 'component'
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      ON b.lft <= a.lft
      AND b.rgt >= a.rgt
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  11. SELECT folder AS type, element AS name, protected, params
      FROM jos_extensions
      WHERE enabled >= 1
      AND type ='plugin'
      AND state >= 0
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      ORDER BY ordering
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      LEFT JOIN jos_extensions AS e
      ON m.component_id = e.extension_id
      WHERE m.published = 1
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      ORDER BY m.lft
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      AND `jos_extensions`.`enabled` = '1'
      AND `jos_extensions`.`type` = 'template'
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  15. SELECT v.id, v.instance, v.toolname, v.title, MAX(v.revision), v.toolaccess, v.codeaccess, v.state, t.state AS tool_state
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      AND t.id=v.toolid
      AND (v.state='1' OR v.state='3')
      GROUP BY toolname
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      AND `element` = 'com_search'
  18. SELECT m.id, m.title, m.module, m.position, m.content, m.showtitle, m.params, mm.menuid, e.protected
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      LEFT JOIN jos_modules_menu AS mm
      ON mm.moduleid = m.id
      LEFT JOIN jos_extensions AS e
      ON e.element = m.module
      AND e.client_id = m.client_id
      WHERE m.published = 1
      AND e.enabled = 1
      AND (m.publish_up = '0000-00-00 00:00:00' OR m.publish_up <= '2017-09-23 09:29:14')
      AND (m.publish_down = '0000-00-00 00:00:00' OR m.publish_down >= '2017-09-23 09:29:14')
      AND m.access IN (1,1,4)
      AND m.client_id = 0
      AND (mm.menuid = 87 OR mm.menuid <= 0)
      ORDER BY m.position, m.ordering
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  27. SELECT extension_id AS id, element AS "option", params, enabled
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  28. SELECT extension_id AS id, element AS "option", params, enabled
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